update config.yaml in git repo to match actual config
drwxr-xr-x - bin
drwxr-xr-x - include
drwxr-xr-x - mirror-index
drwxr-xr-x - misc
drwxr-xr-x - routing
drwxr-xr-x - rrdtool
drwxr-xr-x - snmp
drwxr-xr-x - torrents